Index Symbols | A | B | C | D | F | I | M | O | P | R | S | T | V | Y Symbols --alphareg stabilize command line option --alphas blend command line option --angle deskew command line option --area-threshold stabilize command line option --args info command line option --aspect volrender command line option --attenuation projrender command line option --axis projrender command line option --back-projection deconv command line option --barheight overlay command line option --barlength overlay command line option --barpos overlay command line option --barscale overlay command line option --barunit overlay command line option --blind-spot deconv command line option --bordercolor blend command line option --borderover blend command line option --borderwidth blend command line option --camera-orientation deskew command line option --channels add command line option check command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option, [1] projrender command line option stabilize command line option tiff command line option view command line option volrender command line option --chunks copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option stabilize command line option, [1] --clevel copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option stabilize command line option, [1] tiff command line option --clim projrender command line option view command line option volrender command line option --cliphigh fuse command line option --codec copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option mp4 command line option stabilize command line option, [1] --color overlay command line option --colormap projrender command line option view command line option volrender command line option --com stabilize command line option --compactness stabilize command line option --crop resize command line option --dark-denoise-threshold fuse command line option --dehaze_size fuse command line option --delta-x deskew command line option --delta-z deskew command line option --depth-axis deskew command line option --detection-channels stabilize command line option --detrend stabilize command line option --device blend command line option info command line option overlay command line option resize command line option stabilize command line option, [1] --devices deconv command line option deskew command line option, [1] fuse command line option info command line option projrender command line option stabilize command line option --dir projrender command line option --dlim projrender command line option --downscale view command line option --dsigma stabilize command line option --dxy deconv command line option --dz deconv command line option --edgefilter stabilize command line option --equalisation-ratios fuse command line option --equalise fuse command line option --equalisemode fuse command line option --extension mp4 command line option --features-channels stabilize command line option --flips deskew command line option --fontname overlay command line option --fontsize overlay command line option --framerate mp4 command line option --func-name info command line option --fusion fuse command line option --fusion_bias_strength fuse command line option --gamma projrender command line option stabilize command line option --h-minima stabilize command line option --hugedataset fuse command line option --iterations deconv command line option --labels view command line option --lateral-axis deskew command line option --leading mp4 command line option --legend-alpha projrender command line option --legend-position projrender command line option --legend-scale projrender command line option --legend-size projrender command line option --legend-title projrender command line option --legend-title-color projrender command line option --loadreg fuse command line option --logcomp stabilize command line option --margin overlay command line option --max-correction deconv command line option --maxchange fuse command line option --maximum-count info command line option --maxproj fuse command line option stabilize command line option --maxrange stabilize command line option --method deconv command line option --microscope fuse command line option --minconfidence fuse command line option stabilize command line option --minimum-area stabilize command line option --minimum-count info command line option --mode deskew command line option overlay command line option projrender command line option --model-filename fuse command line option --model-input-path stabilize command line option --model-output-path stabilize command line option --modes blend command line option --no-com stabilize command line option --no-equalise fuse command line option --no-maxproj fuse command line option stabilize command line option --no-scalebar overlay command line option --no-timestamp overlay command line option --num-ape deconv command line option --numberformat overlay command line option --objective deconv command line option --options volrender command line option --ordererror stabilize command line option --orderreg stabilize command line option --orientation stack command line option --out-channel stabilize command line option --output-directory info command line option --output-path add command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option stabilize command line option, [1] tiff command line option --output_path blend command line option mp4 command line option overlay command line option projrender command line option resize command line option stack command line option volrender command line option --overwrite add command line option blend command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option mp4 command line option overlay command line option projrender command line option resize command line option stabilize command line option, [1] stack command line option tiff command line option volrender command line option --pad fuse command line option --padcolor resize command line option --padding deskew command line option --padmode resize command line option --padwidth resize command line option --pcsigma stabilize command line option --pixelformat mp4 command line option --pkg-import info command line option --power deconv command line option --prefix mp4 command line option --preset mp4 command line option --project tiff command line option --projection add command line option --projectionsonly view command line option --quality mp4 command line option --quantile stabilize command line option --quiet view command line option --reference-channel stabilize command line option --regedgefilter fuse command line option --remove-beads fuse command line option --rename-channels add command line option --rendersize volrender command line option --resize resize command line option --resizemode resize command line option --resizeorder resize command line option --rgbgamma projrender command line option --scalebar overlay command line option --scales blend command line option --scaling deconv command line option --show-psf deconv command line option --slicing copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option projrender command line option stabilize command line option tiff command line option volrender command line option --split tiff command line option --store add command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option stabilize command line option, [1] --tilesize deconv command line option deskew command line option info command line option --timeinterval overlay command line option --timepos overlay command line option --timestamp overlay command line option --timestart overlay command line option --timeunit overlay command line option --tolerance stabilize command line option --translations blend command line option --transparency projrender command line option --use-edt stabilize command line option --volumeonly view command line option --warpregiter fuse command line option --wb-order deconv command line option --white-top-hat-sampling fuse command line option --white-top-hat-size fuse command line option --width mp4 command line option --windowsize view command line option --workers blend command line option copy command line option overlay command line option resize command line option stabilize command line option stack command line option tiff command line option --workersbackend blend command line option copy command line option overlay command line option resize command line option stabilize command line option stack command line option tiff command line option --xy-size deconv command line option --z-scale stabilize command line option --z-size deconv command line option --zerolevel copy command line option fuse command line option --zpadapodise fuse command line option -a blend command line option deskew command line option info command line option stabilize command line option volrender command line option -at projrender command line option -ax projrender command line option -bc blend command line option -bh overlay command line option -bl overlay command line option -bo blend command line option -bp deconv command line option overlay command line option -bs deconv command line option overlay command line option -bu overlay command line option -bw blend command line option -c add command line option check command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option, [1] mp4 command line option overlay command line option projrender command line option resize command line option stabilize command line option tiff command line option view command line option volrender command line option -cg projrender command line option -ch fuse command line option -chk copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option stabilize command line option, [1] -cl projrender command line option view command line option volrender command line option -cm projrender command line option view command line option volrender command line option -cmp stabilize command line option -co deskew command line option -d blend command line option deconv command line option deskew command line option, [1] fuse command line option info command line option, [1] overlay command line option projrender command line option resize command line option stabilize command line option, [1], [2] view command line option -dc stabilize command line option -ddt fuse command line option -dhs fuse command line option -di projrender command line option -dl projrender command line option -ds stabilize command line option -dt stabilize command line option -dxy deconv command line option -dz deconv command line option -e mp4 command line option stabilize command line option -ef stabilize command line option -eq fuse command line option -eqm fuse command line option -eqr fuse command line option -f fuse command line option info command line option -fbs fuse command line option -fc stabilize command line option -fl deskew command line option -fn overlay command line option -fps mp4 command line option -fs overlay command line option -g projrender command line option stabilize command line option -h stabilize command line option -hd fuse command line option -i deconv command line option -k blend command line option overlay command line option resize command line option stack command line option -l copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option mp4 command line option stabilize command line option, [1] tiff command line option view command line option -la projrender command line option -lc stabilize command line option -lp projrender command line option -lr fuse command line option -lsc projrender command line option -lsi projrender command line option -lt projrender command line option -ltc projrender command line option -M info command line option -m blend command line option deconv command line option deskew command line option fuse command line option info command line option projrender command line option stabilize command line option -mc deconv command line option fuse command line option stabilize command line option -md fuse command line option overlay command line option -mf fuse command line option -mg overlay command line option -mi stabilize command line option -mo stabilize command line option -mp fuse command line option stabilize command line option -mr stabilize command line option -na deconv command line option -ne stabilize command line option -neq fuse command line option -nf overlay command line option -nmp fuse command line option stabilize command line option -np add command line option -nsb overlay command line option -nts overlay command line option -o add command line option blend command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option, [1] mp4 command line option overlay command line option projrender command line option resize command line option stabilize command line option, [1] stack command line option tiff command line option volrender command line option -obj deconv command line option -oc stabilize command line option -oe stabilize command line option -opt volrender command line option -or stabilize command line option, [1] stack command line option -p add command line option deskew command line option fuse command line option mp4 command line option tiff command line option -pc resize command line option -pf mp4 command line option -pkg info command line option -pm resize command line option -po view command line option -ps mp4 command line option -pw deconv command line option resize command line option -q mp4 command line option stabilize command line option view command line option -r resize command line option -rb fuse command line option -rc add command line option stabilize command line option -ref fuse command line option -rm resize command line option -ro resize command line option -rs stabilize command line option volrender command line option -s blend command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option projrender command line option stabilize command line option tiff command line option volrender command line option -sb overlay command line option -sc deconv command line option -sp deconv command line option -st add command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option stabilize command line option, [1] -sxy deconv command line option -sz deconv command line option -t blend command line option projrender command line option stabilize command line option -ti overlay command line option -tp overlay command line option -ts deconv command line option deskew command line option info command line option overlay command line option, [1] -tu overlay command line option -vo view command line option -w add command line option blend command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option mp4 command line option overlay command line option projrender command line option resize command line option stabilize command line option, [1] stack command line option tiff command line option volrender command line option -wbo deconv command line option -wi mp4 command line option -wk copy command line option stabilize command line option tiff command line option -wkb blend command line option copy command line option overlay command line option resize command line option stabilize command line option stack command line option tiff command line option -wri fuse command line option -ws view command line option -wth fuse command line option -wths fuse command line option -xa deskew command line option -xx deskew command line option -z copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option stabilize command line option, [1], [2] -za deskew command line option -zl copy command line option fuse command line option -zpa fuse command line option -zz deskew command line option A add command line option --channels --output-path --overwrite --projection --rename-channels --store -c -np -o -p -rc -st -w INPUT_PATHS admm_deconvolution() (in module dexp.processing.deconvolution) B binary_blobs() (in module dexp.datasets.synthetic_datasets) blend command line option --alphas --bordercolor --borderover --borderwidth --device --modes --output_path --overwrite --scales --translations --workers --workersbackend -a -bc -bo -bw -d -k -m -o -s -t -w -wkb INPUT_PATHS blind_deconvolution() (in module dexp.processing.deconvolution) C check command line option --channels -c INPUT_PATHS classic_deskew() (in module dexp.processing.deskew) copy command line option --channels --chunks --clevel --codec --output-path --overwrite --slicing --store --workers --workersbackend --zerolevel -c -chk -l -o -s -st -w -wk -wkb -z -zl INPUT_PATHS D deconv command line option --back-projection --blind-spot --channels --chunks --clevel --codec --devices --dxy --dz --iterations --max-correction --method --num-ape --objective --output-path --overwrite --power --scaling --show-psf --slicing --store --tilesize --wb-order --xy-size --z-size -bp -bs -c -chk -d -dxy -dz -i -l -m -mc -na -o -obj -pw -s -sc -sp -st -sxy -sz -ts -w -wbo -z INPUT_PATHS deskew command line option --angle --camera-orientation --channels, [1] --chunks, [1] --clevel, [1] --codec, [1] --delta-x --delta-z --depth-axis --devices, [1] --flips --lateral-axis --mode --output-path, [1] --overwrite, [1] --padding --slicing, [1] --store, [1] --tilesize -a -c, [1] -chk, [1] -co -d, [1] -fl -l, [1] -m -o, [1] -p -s, [1] -st, [1] -ts -w, [1] -xa -xx -z, [1] -za -zz INPUT_PATHS, [1] dexp.datasets module dexp.datasets.base_dataset module dexp.datasets.clearcontrol_dataset module dexp.datasets.joined_dataset module dexp.datasets.ome_dataset module dexp.datasets.open_dataset module dexp.datasets.operations module dexp.datasets.operations.background module dexp.datasets.operations.copy module dexp.datasets.operations.crop module dexp.datasets.operations.deconv module dexp.datasets.operations.denoise module dexp.datasets.operations.deskew module dexp.datasets.operations.extract_psf module dexp.datasets.operations.fromraw module dexp.datasets.operations.fuse module dexp.datasets.operations.generic module dexp.datasets.operations.histogram module dexp.datasets.operations.projrender module dexp.datasets.operations.register module dexp.datasets.operations.segment module dexp.datasets.operations.stabilize module dexp.datasets.operations.tiff module dexp.datasets.operations.view module dexp.datasets.stack_iterator module dexp.datasets.synthetic_datasets module dexp.datasets.synthetic_datasets.dexp_dataset module dexp.datasets.synthetic_datasets.multiview_data module dexp.datasets.synthetic_datasets.nuclei_background_data module dexp.datasets.tiff_dataset module dexp.datasets.zarr_dataset module dexp.optics module dexp.optics.psf module dexp.optics.psf.microscope_psf module dexp.optics.psf.standard_psfs module dexp.processing module dexp.processing.color module dexp.processing.color.blend module dexp.processing.color.border module dexp.processing.color.cairo_utils module dexp.processing.color.colormap module dexp.processing.color.conversions module dexp.processing.color.crop_resize_pad module dexp.processing.color.insert module dexp.processing.color.projection module dexp.processing.color.projection_legend module dexp.processing.color.scale_bar module dexp.processing.color.time_stamp module dexp.processing.crop module dexp.processing.crop.background module dexp.processing.crop.demo module dexp.processing.crop.demo.demo_rep_crop module dexp.processing.crop.representative_crop module dexp.processing.deconvolution module dexp.processing.deconvolution.admm_utils module dexp.processing.deconvolution.lr_deconvolution module dexp.processing.denoising module dexp.processing.denoising.butterworth module dexp.processing.denoising.demo module dexp.processing.denoising.demo.demo_2D_butterworth module dexp.processing.denoising.demo.demo_2D_gaussian module dexp.processing.denoising.demo.demo_3D_butterworth module dexp.processing.denoising.demo.demo_noise module dexp.processing.denoising.gaussian module dexp.processing.denoising.j_invariance module dexp.processing.denoising.metrics module dexp.processing.denoising.noise module dexp.processing.deskew module dexp.processing.deskew.utils module dexp.processing.equalise module dexp.processing.equalise.equalise_intensity module dexp.processing.filters module dexp.processing.filters.butterworth_filter module dexp.processing.filters.fft_convolve module dexp.processing.filters.kernels module dexp.processing.filters.kernels.butterworth module dexp.processing.filters.kernels.gaussian module dexp.processing.filters.kernels.wiener module dexp.processing.filters.kernels.wiener_butterworth module dexp.processing.filters.sobel_filter module dexp.processing.fusion module dexp.processing.fusion.dct_fusion module dexp.processing.fusion.dft_fusion module dexp.processing.fusion.tg_fusion module dexp.processing.interpolation module dexp.processing.interpolation.warp module dexp.processing.morphology module dexp.processing.morphology.component_tree module dexp.processing.morphology.utils module dexp.processing.multiview_lightsheet module dexp.processing.multiview_lightsheet.deconvolution module dexp.processing.multiview_lightsheet.fusion module dexp.processing.multiview_lightsheet.fusion.basefusion module dexp.processing.multiview_lightsheet.fusion.mvsols module dexp.processing.multiview_lightsheet.fusion.simview module dexp.processing.optimization module dexp.processing.optimization.grid_search module dexp.processing.registration module dexp.processing.registration.model module dexp.processing.registration.model.model_io module dexp.processing.registration.model.pairwise_registration_model module dexp.processing.registration.model.sequence_registration_model module dexp.processing.registration.model.translation_registration_model module dexp.processing.registration.model.warp_registration_model module dexp.processing.registration.sequence module dexp.processing.registration.sequence_proj module dexp.processing.registration.translation_2d module dexp.processing.registration.translation_nd module dexp.processing.registration.translation_nd_proj module dexp.processing.registration.warp_multiscale_nd module dexp.processing.registration.warp_nd module dexp.processing.remove_beads module dexp.processing.remove_beads.beadsremover module dexp.processing.restoration module dexp.processing.restoration.aap_correction module dexp.processing.restoration.clean_dark_regions module dexp.processing.restoration.dehazing module dexp.processing.restoration.lipshitz_correction module dexp.processing.segmentation module dexp.processing.segmentation.watershed module dexp.processing.utils module dexp.processing.utils.apply module dexp.processing.utils.blend_images module dexp.processing.utils.center_of_mass module dexp.processing.utils.element_wise_affine module dexp.processing.utils.fit_shape module dexp.processing.utils.linear_solver module dexp.processing.utils.mkl_util module dexp.processing.utils.nan_to_zero module dexp.processing.utils.nd_slice module dexp.processing.utils.normalise module dexp.processing.utils.pad module dexp.processing.utils.projection_generator module dexp.processing.utils.scatter_gather_i2i module dexp.processing.utils.scatter_gather_i2v module dexp.utils module dexp.utils.backends module dexp.utils.backends.backend module dexp.utils.backends.best_backend module dexp.utils.backends.cupy_backend module dexp.utils.backends.numpy_backend module dexp.utils.config module dexp.utils.dask module dexp.utils.fft module dexp.utils.lock module dexp.utils.misc module dexp.utils.robocopy module dexp.utils.slicing module dexp.utils.speed_test module dexp.utils.testing module dexp.utils.testing.testing module dexp.utils.timeit module dexp.video module dexp.video.blend module dexp.video.crop_resize_pad module dexp.video.overlay module dexp.volumerender module dexp.volumerender.quaternion module dexp.volumerender.transform_matrices module dexp.volumerender.volumerender module F fuse command line option --channels --chunks --clevel --cliphigh --codec --dark-denoise-threshold --dehaze_size --devices --equalisation-ratios --equalise --equalisemode --fusion --fusion_bias_strength --hugedataset --loadreg --maxchange --maxproj --microscope --minconfidence --model-filename --no-equalise --no-maxproj --output-path --overwrite --pad --regedgefilter --remove-beads --slicing --store --warpregiter --white-top-hat-sampling --white-top-hat-size --zerolevel --zpadapodise -c -ch -chk -d -ddt -dhs -eq -eqm -eqr -f -fbs -hd -l -lr -m -mc -md -mf -mp -neq -nmp -o -p -rb -ref -s -st -w -wri -wth -wths -z -zl -zpa INPUT_PATHS I info command line option --args --channels, [1] --chunks --clevel --codec --device --devices --func-name --maximum-count --minimum-count --output-directory --output-path --overwrite --pkg-import --slicing --store --tilesize -a -c, [1] -chk -d, [1] -f -l -m -M -o, [1] -pkg -s -st -ts -w -z INPUT_PATHS, [1], [2] INPUT_PATH mp4 command line option overlay command line option resize command line option INPUT_PATHS add command line option blend command line option check command line option copy command line option deconv command line option deskew command line option, [1] fuse command line option info command line option, [1], [2] projrender command line option stabilize command line option, [1] stack command line option tiff command line option view command line option volrender command line option inversion_deconvolution() (in module dexp.processing.deconvolution) M module dexp.datasets dexp.datasets.base_dataset dexp.datasets.clearcontrol_dataset dexp.datasets.joined_dataset dexp.datasets.ome_dataset dexp.datasets.open_dataset dexp.datasets.operations dexp.datasets.operations.background dexp.datasets.operations.copy dexp.datasets.operations.crop dexp.datasets.operations.deconv dexp.datasets.operations.denoise dexp.datasets.operations.deskew dexp.datasets.operations.extract_psf dexp.datasets.operations.fromraw dexp.datasets.operations.fuse dexp.datasets.operations.generic dexp.datasets.operations.histogram dexp.datasets.operations.projrender dexp.datasets.operations.register dexp.datasets.operations.segment dexp.datasets.operations.stabilize dexp.datasets.operations.tiff dexp.datasets.operations.view dexp.datasets.stack_iterator dexp.datasets.synthetic_datasets dexp.datasets.synthetic_datasets.dexp_dataset dexp.datasets.synthetic_datasets.multiview_data dexp.datasets.synthetic_datasets.nuclei_background_data dexp.datasets.tiff_dataset dexp.datasets.zarr_dataset dexp.optics dexp.optics.psf dexp.optics.psf.microscope_psf dexp.optics.psf.standard_psfs dexp.processing dexp.processing.color dexp.processing.color.blend dexp.processing.color.border dexp.processing.color.cairo_utils dexp.processing.color.colormap dexp.processing.color.conversions dexp.processing.color.crop_resize_pad dexp.processing.color.insert dexp.processing.color.projection dexp.processing.color.projection_legend dexp.processing.color.scale_bar dexp.processing.color.time_stamp dexp.processing.crop dexp.processing.crop.background dexp.processing.crop.demo dexp.processing.crop.demo.demo_rep_crop dexp.processing.crop.representative_crop dexp.processing.deconvolution dexp.processing.deconvolution.admm_utils dexp.processing.deconvolution.lr_deconvolution dexp.processing.denoising dexp.processing.denoising.butterworth dexp.processing.denoising.demo dexp.processing.denoising.demo.demo_2D_butterworth dexp.processing.denoising.demo.demo_2D_gaussian dexp.processing.denoising.demo.demo_3D_butterworth dexp.processing.denoising.demo.demo_noise dexp.processing.denoising.gaussian dexp.processing.denoising.j_invariance dexp.processing.denoising.metrics dexp.processing.denoising.noise dexp.processing.deskew dexp.processing.deskew.utils dexp.processing.equalise dexp.processing.equalise.equalise_intensity dexp.processing.filters dexp.processing.filters.butterworth_filter dexp.processing.filters.fft_convolve dexp.processing.filters.kernels dexp.processing.filters.kernels.butterworth dexp.processing.filters.kernels.gaussian dexp.processing.filters.kernels.wiener dexp.processing.filters.kernels.wiener_butterworth dexp.processing.filters.sobel_filter dexp.processing.fusion dexp.processing.fusion.dct_fusion dexp.processing.fusion.dft_fusion dexp.processing.fusion.tg_fusion dexp.processing.interpolation dexp.processing.interpolation.warp dexp.processing.morphology dexp.processing.morphology.component_tree dexp.processing.morphology.utils dexp.processing.multiview_lightsheet dexp.processing.multiview_lightsheet.deconvolution dexp.processing.multiview_lightsheet.fusion dexp.processing.multiview_lightsheet.fusion.basefusion dexp.processing.multiview_lightsheet.fusion.mvsols dexp.processing.multiview_lightsheet.fusion.simview dexp.processing.optimization dexp.processing.optimization.grid_search dexp.processing.registration dexp.processing.registration.model dexp.processing.registration.model.model_io dexp.processing.registration.model.pairwise_registration_model dexp.processing.registration.model.sequence_registration_model dexp.processing.registration.model.translation_registration_model dexp.processing.registration.model.warp_registration_model dexp.processing.registration.sequence dexp.processing.registration.sequence_proj dexp.processing.registration.translation_2d dexp.processing.registration.translation_nd dexp.processing.registration.translation_nd_proj dexp.processing.registration.warp_multiscale_nd dexp.processing.registration.warp_nd dexp.processing.remove_beads dexp.processing.remove_beads.beadsremover dexp.processing.restoration dexp.processing.restoration.aap_correction dexp.processing.restoration.clean_dark_regions dexp.processing.restoration.dehazing dexp.processing.restoration.lipshitz_correction dexp.processing.segmentation dexp.processing.segmentation.watershed dexp.processing.utils dexp.processing.utils.apply dexp.processing.utils.blend_images dexp.processing.utils.center_of_mass dexp.processing.utils.element_wise_affine dexp.processing.utils.fit_shape dexp.processing.utils.linear_solver dexp.processing.utils.mkl_util dexp.processing.utils.nan_to_zero dexp.processing.utils.nd_slice dexp.processing.utils.normalise dexp.processing.utils.pad dexp.processing.utils.projection_generator dexp.processing.utils.scatter_gather_i2i dexp.processing.utils.scatter_gather_i2v dexp.utils dexp.utils.backends dexp.utils.backends.backend dexp.utils.backends.best_backend dexp.utils.backends.cupy_backend dexp.utils.backends.numpy_backend dexp.utils.config dexp.utils.dask dexp.utils.fft dexp.utils.lock dexp.utils.misc dexp.utils.robocopy dexp.utils.slicing dexp.utils.speed_test dexp.utils.testing dexp.utils.testing.testing dexp.utils.timeit dexp.video dexp.video.blend dexp.video.crop_resize_pad dexp.video.overlay dexp.volumerender dexp.volumerender.quaternion dexp.volumerender.transform_matrices dexp.volumerender.volumerender mp4 command line option --codec --extension --framerate --leading --output_path --overwrite --pixelformat --prefix --preset --quality --width -c -e -fps -l -o -p -pf -ps -q -w -wi INPUT_PATH O overlay command line option --barheight --barlength --barpos --barscale --barunit --color --device --fontname --fontsize --margin --mode --no-scalebar --no-timestamp --numberformat --output_path --overwrite --scalebar --timeinterval --timepos --timestamp --timestart --timeunit --workers --workersbackend -bh -bl -bp -bs -bu -c -d -fn -fs -k -md -mg -nf -nsb -nts -o -sb -ti -tp -ts, [1] -tu -w -wkb INPUT_PATH P projrender command line option --attenuation --axis --channels --clim --colormap --devices --dir --dlim --gamma --legend-alpha --legend-position --legend-scale --legend-size --legend-title --legend-title-color --mode --output_path --overwrite --rgbgamma --slicing --transparency -at -ax -c -cg -cl -cm -d -di -dl -g -la -lp -lsc -lsi -lt -ltc -m -o -s -t -w INPUT_PATHS R resize command line option --crop --device --output_path --overwrite --padcolor --padmode --padwidth --resize --resizemode --resizeorder --workers --workersbackend -c -d -k -o -pc -pm -pw -r -rm -ro -w -wkb INPUT_PATH S stabilize command line option --alphareg --area-threshold --channels --chunks, [1] --clevel, [1] --codec, [1] --com --compactness --detection-channels --detrend --device, [1] --devices --dsigma --edgefilter --features-channels --gamma --h-minima --logcomp --maxproj --maxrange --minconfidence --minimum-area --model-input-path --model-output-path --no-com --no-maxproj --ordererror --orderreg --out-channel --output-path, [1] --overwrite, [1] --pcsigma --quantile --reference-channel --slicing --store, [1] --tolerance --use-edt --workers --workersbackend --z-scale -a -c -chk, [1] -cmp -d, [1], [2] -dc -ds -dt -e -ef -fc -g -h -l, [1] -lc -m -mc -mi -mo -mp -mr -ne -nmp -o, [1] -oc -oe -or, [1] -q -rc -rs -s -st, [1] -t -w, [1] -wk -wkb -z, [1], [2] INPUT_PATHS, [1] stack command line option --orientation --output_path --overwrite --workers --workersbackend -k -o -or -w -wkb INPUT_PATHS T tiff command line option --channels --clevel --output-path --overwrite --project --slicing --split --workers --workersbackend -c -l -o -p -s -w -wk -wkb INPUT_PATHS V view command line option --channels --clim --colormap --downscale --labels --projectionsonly --quiet --volumeonly --windowsize -c -cl -cm -d -l -po -q -vo -ws INPUT_PATHS volrender command line option --aspect --channels --clim --colormap --options --output_path --overwrite --rendersize --slicing -a -c -cl -cm -o -opt -rs -s -w INPUT_PATHS Y yang_deskew() (in module dexp.processing.deskew)