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dexp documentation

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dexp documentation

Getting started

Install
Contact us

How-to guides

Converting to our file format
Visualizing your data
Processing a multi-view dataset using DEXP CLI
Implementing your own processing pipeline

Commands

Image processing
Video rendering

API

API
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- dexp.datasets
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- dexp.optics
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  - dexp.optics.psf
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    - dexp.optics.psf.microscope_psf
    - dexp.optics.psf.standard_psfs
- dexp.processing
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  - dexp.processing.color
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  - dexp.processing.crop
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    - dexp.processing.crop.background
    - dexp.processing.crop.demo
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      - dexp.processing.crop.demo.demo_rep_crop
    - dexp.processing.crop.representative_crop
  - dexp.processing.deconvolution
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  - dexp.processing.denoising
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  - dexp.processing.deskew
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  - dexp.processing.equalise
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    - dexp.processing.equalise.equalise_intensity
  - dexp.processing.filters
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  - dexp.processing.fusion
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  - dexp.processing.interpolation
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    - dexp.processing.interpolation.warp
  - dexp.processing.morphology
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    - dexp.processing.morphology.component_tree
    - dexp.processing.morphology.utils
  - dexp.processing.multiview_lightsheet
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    - dexp.processing.multiview_lightsheet.deconvolution
    - dexp.processing.multiview_lightsheet.fusion
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  - dexp.processing.optimization
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    - dexp.processing.optimization.grid_search
  - dexp.processing.registration
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  - dexp.processing.remove_beads
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    - dexp.processing.remove_beads.beadsremover
  - dexp.processing.restoration
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  - dexp.processing.segmentation
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    - dexp.processing.segmentation.watershed
  - dexp.processing.utils
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- dexp.utils
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  - dexp.utils.backends
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  - dexp.utils.config
  - dexp.utils.dask
  - dexp.utils.fft
  - dexp.utils.lock
  - dexp.utils.misc
  - dexp.utils.robocopy
  - dexp.utils.slicing
  - dexp.utils.speed_test
  - dexp.utils.testing
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    - dexp.utils.testing.testing
  - dexp.utils.timeit
- dexp.video
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- dexp.volumerender
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dexp.processing.registration.warp_multiscale_nd