Getting Started
Install
Hardware Requirements
Use Cases
Introduction
Denoising Basics with Aydin
Noisy ‘New York’ Test Image
Spinning-Disk Confocal Images of Zebrafish Embryos
Spinning-Disk Confocal Microscopy Images of Mouse Embryos
OpenCell Images
Chicken Embryos LSM 780 Images
Tutorials
Tutorials Home
Aydin Studio (GUI) Tutorials
Aydin CLI Tutorials
Aydin API Tutorials
API Reference
Introduction
Restoration
Image Translator
Transforms
Feature Generator
Regressors
IO
NN
Options JSON
Example Images Gallery
Contact Us
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Aydin
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Index
Index
A
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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P
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R
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S
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T
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U
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V
A
add_feature_group() (aydin.features.extensible_features.ExtensibleFeatureGenerator method)
(aydin.features.standard_features.StandardFeatureGenerator method)
add_transform() (aydin.it.base.ImageTranslatorBase method)
(aydin.it.classic.ImageDenoiserClassic method)
(aydin.it.cnn.ImageTranslatorCNN method)
(aydin.it.fgr.ImageTranslatorFGR method)
archive() (aydin.restoration.denoise.classic.Classic static method)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN static method)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR static method)
AttenuationTransform (class in aydin.it.transforms.attenuation)
C
calibrate_denoise_bilateral() (in module aydin.it.classic_denoisers.bilateral)
calibrate_denoise_bmnd() (in module aydin.it.classic_denoisers.bmnd)
calibrate_denoise_butterworth() (in module aydin.it.classic_denoisers.butterworth)
calibrate_denoise_dictionary_fixed() (in module aydin.it.classic_denoisers.dictionary_fixed)
calibrate_denoise_dictionary_learned() (in module aydin.it.classic_denoisers.dictionary_learned)
calibrate_denoise_gaussian() (in module aydin.it.classic_denoisers.gaussian)
calibrate_denoise_gm() (in module aydin.it.classic_denoisers.gm)
calibrate_denoise_harmonic() (in module aydin.it.classic_denoisers.harmonic)
calibrate_denoise_lipschitz() (in module aydin.it.classic_denoisers.lipschitz)
calibrate_denoise_nlm() (in module aydin.it.classic_denoisers.nlm)
calibrate_denoise_pca() (in module aydin.it.classic_denoisers.pca)
calibrate_denoise_spectral() (in module aydin.it.classic_denoisers.spectral)
calibrate_denoise_tv() (in module aydin.it.classic_denoisers.tv)
calibrate_denoise_wavelet() (in module aydin.it.classic_denoisers.wavelet)
CBRegressor (class in aydin.regression.cb)
Classic (class in aydin.restoration.denoise.classic)
classic_denoise() (in module aydin)
clean_model_folder() (aydin.restoration.denoise.classic.Classic static method)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN static method)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR static method)
clear_features() (aydin.features.extensible_features.ExtensibleFeatureGenerator method)
(aydin.features.standard_features.StandardFeatureGenerator method)
clear_transforms() (aydin.it.base.ImageTranslatorBase method)
(aydin.it.classic.ImageDenoiserClassic method)
(aydin.it.cnn.ImageTranslatorCNN method)
(aydin.it.fgr.ImageTranslatorFGR method)
compute() (aydin.features.base.FeatureGeneratorBase method)
(aydin.features.extensible_features.ExtensibleFeatureGenerator method)
(aydin.features.standard_features.StandardFeatureGenerator method)
configurable_arguments (aydin.restoration.denoise.classic.Classic property)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN property)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR property)
create_feature_array() (aydin.features.base.FeatureGeneratorBase method)
(aydin.features.extensible_features.ExtensibleFeatureGenerator method)
(aydin.features.standard_features.StandardFeatureGenerator method)
D
denoise() (aydin.restoration.denoise.classic.Classic method)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN method)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR method)
denoise_bilateral() (in module aydin.it.classic_denoisers.bilateral)
denoise_bmnd() (in module aydin.it.classic_denoisers.bmnd)
denoise_butterworth() (in module aydin.it.classic_denoisers.butterworth)
denoise_dictionary_fixed() (in module aydin.it.classic_denoisers.dictionary_fixed)
denoise_dictionary_learned() (in module aydin.it.classic_denoisers.dictionary_learned)
denoise_gaussian() (in module aydin.it.classic_denoisers.gaussian)
denoise_gm() (in module aydin.it.classic_denoisers.gm)
denoise_harmonic() (in module aydin.it.classic_denoisers.harmonic)
denoise_lipschitz() (in module aydin.it.classic_denoisers.lipschitz)
denoise_nlm() (in module aydin.it.classic_denoisers.nlm)
denoise_pca() (in module aydin.it.classic_denoisers.pca)
denoise_spectral() (in module aydin.it.classic_denoisers.spectral)
denoise_tv() (in module aydin.it.classic_denoisers.tv)
denoise_wavelet() (in module aydin.it.classic_denoisers.wavelet)
DeskewTransform (class in aydin.it.transforms.deskew)
E
ExtensibleFeatureGenerator (class in aydin.features.extensible_features)
F
FeatureGeneratorBase (class in aydin.features.base)
FileMetadata (class in aydin.io.io)
fit() (aydin.regression.cb.CBRegressor method)
(aydin.regression.lgbm.LGBMRegressor method)
(aydin.regression.linear.LinearRegressor method)
(aydin.regression.perceptron.PerceptronRegressor method)
(aydin.regression.random_forest.RandomForestRegressor method)
(aydin.regression.support_vector.SupportVectorRegressor method)
FixedPatternTransform (class in aydin.it.transforms.fixedpattern)
forward() (aydin.nn.models.jinet.JINetModel method)
(aydin.nn.models.unet.UNetModel method)
G
get_cache_folder() (in module aydin.io.folders)
get_generator() (aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR method)
get_home_folder() (in module aydin.io.folders)
get_num_features() (aydin.features.extensible_features.ExtensibleFeatureGenerator method)
(aydin.features.standard_features.StandardFeatureGenerator method)
get_receptive_field_radius() (aydin.features.base.FeatureGeneratorBase method)
(aydin.features.extensible_features.ExtensibleFeatureGenerator method)
(aydin.features.standard_features.StandardFeatureGenerator method)
get_regressor() (aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR method)
get_temp_folder() (in module aydin.io.folders)
get_translator() (aydin.restoration.denoise.classic.Classic method)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN method)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR method)
H
HighpassTransform (class in aydin.it.transforms.highpass)
HistogramEqualisationTransform (class in aydin.it.transforms.histogram)
I
ImageDenoiserClassic (class in aydin.it.classic)
ImageTranslatorBase (class in aydin.it.base)
ImageTranslatorCNN (class in aydin.it.cnn)
ImageTranslatorFGR (class in aydin.it.fgr)
implementations (aydin.restoration.denoise.classic.Classic property)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN property)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR property)
imread() (in module aydin.io.io)
imwrite() (in module aydin.io.io)
is_batch() (in module aydin.io.io)
is_channel() (in module aydin.io.io)
J
JINetModel (class in aydin.nn.models.jinet)
L
LGBMRegressor (class in aydin.regression.lgbm)
LinearRegressor (class in aydin.regression.linear)
load() (aydin.features.base.FeatureGeneratorBase static method)
(aydin.features.extensible_features.ExtensibleFeatureGenerator static method)
(aydin.features.standard_features.StandardFeatureGenerator static method)
(aydin.it.base.ImageTranslatorBase static method)
(aydin.it.classic.ImageDenoiserClassic static method)
(aydin.it.cnn.ImageTranslatorCNN static method)
(aydin.it.fgr.ImageTranslatorFGR static method)
(aydin.regression.cb.CBRegressor static method)
(aydin.regression.lgbm.LGBMRegressor static method)
(aydin.regression.linear.LinearRegressor static method)
(aydin.regression.perceptron.PerceptronRegressor static method)
(aydin.regression.random_forest.RandomForestRegressor static method)
(aydin.regression.support_vector.SupportVectorRegressor static method)
(aydin.restoration.denoise.classic.Classic method)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN method)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR method)
M
MotionStabilisationTransform (class in aydin.it.transforms.motion)
N
noise2self_cnn() (in module aydin)
noise2self_fgr() (in module aydin)
Noise2SelfCNN (class in aydin.restoration.denoise.noise2selfcnn)
Noise2SelfFGR (class in aydin.restoration.denoise.noise2selffgr)
P
PaddingTransform (class in aydin.it.transforms.padding)
parse_axes_args() (aydin.it.base.ImageTranslatorBase static method)
(aydin.it.classic.ImageDenoiserClassic static method)
(aydin.it.cnn.ImageTranslatorCNN static method)
(aydin.it.fgr.ImageTranslatorFGR static method)
PerceptronRegressor (class in aydin.regression.perceptron)
PeriodicNoiseSuppressionTransform (class in aydin.it.transforms.periodic)
predict() (aydin.regression.cb.CBRegressor method)
(aydin.regression.lgbm.LGBMRegressor method)
(aydin.regression.linear.LinearRegressor method)
(aydin.regression.perceptron.PerceptronRegressor method)
(aydin.regression.random_forest.RandomForestRegressor method)
(aydin.regression.support_vector.SupportVectorRegressor method)
R
RandomForestRegressor (class in aydin.regression.random_forest)
RangeTransform (class in aydin.it.transforms.range)
recommended_max_num_datapoints() (aydin.regression.cb.CBRegressor method)
(aydin.regression.lgbm.LGBMRegressor method)
(aydin.regression.linear.LinearRegressor method)
(aydin.regression.perceptron.PerceptronRegressor method)
(aydin.regression.random_forest.RandomForestRegressor method)
(aydin.regression.support_vector.SupportVectorRegressor method)
S
SaltPepperTransform (class in aydin.it.transforms.salt_pepper)
save() (aydin.features.base.FeatureGeneratorBase method)
(aydin.features.extensible_features.ExtensibleFeatureGenerator method)
(aydin.features.standard_features.StandardFeatureGenerator method)
(aydin.it.base.ImageTranslatorBase method)
(aydin.it.classic.ImageDenoiserClassic method)
(aydin.it.cnn.ImageTranslatorCNN method)
(aydin.it.fgr.ImageTranslatorFGR method)
(aydin.regression.cb.CBRegressor method)
(aydin.regression.lgbm.LGBMRegressor method)
(aydin.regression.linear.LinearRegressor method)
(aydin.regression.perceptron.PerceptronRegressor method)
(aydin.regression.random_forest.RandomForestRegressor method)
(aydin.regression.support_vector.SupportVectorRegressor method)
(aydin.restoration.denoise.classic.Classic method)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN method)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR method)
StandardFeatureGenerator (class in aydin.features.standard_features)
stop_fit() (aydin.regression.cb.CBRegressor method)
(aydin.regression.lgbm.LGBMRegressor method)
(aydin.regression.linear.LinearRegressor method)
(aydin.regression.perceptron.PerceptronRegressor method)
(aydin.regression.random_forest.RandomForestRegressor method)
(aydin.regression.support_vector.SupportVectorRegressor method)
stop_running() (aydin.restoration.denoise.classic.Classic method)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN method)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR method)
stop_training() (aydin.it.cnn.ImageTranslatorCNN method)
(aydin.it.fgr.ImageTranslatorFGR method)
SupportVectorRegressor (class in aydin.regression.support_vector)
T
train() (aydin.it.base.ImageTranslatorBase method)
(aydin.it.classic.ImageDenoiserClassic method)
(aydin.it.cnn.ImageTranslatorCNN method)
(aydin.it.fgr.ImageTranslatorFGR method)
(aydin.restoration.denoise.classic.Classic method)
(aydin.restoration.denoise.noise2selfcnn.Noise2SelfCNN method)
(aydin.restoration.denoise.noise2selffgr.Noise2SelfFGR method)
U
UNetModel (class in aydin.nn.models.unet)
V
VarianceStabilisationTransform (class in aydin.it.transforms.variance_stabilisation)
Other Versions
: v0.1.15
Tags
v0.1.11
v0.1.12
v0.1.13
v0.1.14
v0.1.15
v0.1.8
v0.1.9