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ultrack
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Basics:

  • Quickstart
  • Installation
  • Napari plugin
  • FIJI plugin
  • Getting started
  • Examples
  • Notebooks
    • API usage example
    • Tracking highly motile cells using flow field estimation and Ultrack
    • 2D cell tracking with Ultrack and MicroSAM
    • Tracking multi-colored cells using segmentation ensemble
    • Segmentation & tracking from cell boundaries prediction
    • 2D cell tracking with Ultrack and Stardist
    • 3D cell tracking with Ultrack
  • Tuning tracking performance
  • Configuration
  • Ultrack Docker Image
  • FAQ
  • Theory
  • Ultrack’s appearances

Reference:

  • API
  • CLI
  • REST API
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Theory¶

See our algorithm description in our computer vision paper.

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Ultrack’s appearances
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