Ultrack I2K 2024 Tutorial#
This is the From Images to Knowledge (I2K) tutorial on Ultrack, a Python package for large-scale cell tracking under segmentation uncertainty.
The tutorial will be held on Friday, October 25, 2024, from 12:00 to 13:30, see details here.
See left sidebar for the tutorial content.
Goals#
There are two goals with this tutorial:
Introduce the participants to ultrack package and its capabilities.
Show that there are other ways of segmentating and tracking cells rather than training by annotating thousands of cells and applying deep learning models. Pre-trained models and classical algorithms are our friends and can be used to solve many problems.
Notes#
Warning
The notebooks are provided as Markdown files (.md) to open them as Jupyter Notebooks, you must right click on the file on your Jupyter interface and select Open with -> Notebook.
Instructors#
The instructors for this workshop are:
Jordão Bragantini
Teun A.P.M. Huijben
Pre-tutorial setup#
Because this is a short tutorial (30 minutes), please download this repository and setup the programming environment before the tutorial starts.